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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28580619_28580733_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28580619 - 28580733
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCATGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
ACTGTCTTATTG
Flanking Amino Acid:
CNAETKVEIEVRVKSCDCLN
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
68.7
0.42
0.9
62
39.7
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
49
-0.2
1.7
52.4
43.3

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006013
28567823 - 28610166
42344
ENSAPLT00000046864
28567823 - 28610166
42344
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605