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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28580769_28580849_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28580769 - 28580849
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCAGTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
ILFTLESGPEDDCNAETKVE
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.2
60.5
39
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
34
-1.8
3.7
50
46.5
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037502
28567823 - 28610166
42344