About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28582562_28582924_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28582562 - 28582924
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCTATAAAA
Flanking Amino Acid:
SQESVLCTLKEKTCNIDGLC
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.8
38.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
64.3
0.32
1.1
65.8
38.2
Minor 5ss
44.8
-0.6
2.7
59.2
45.4
Minor BPS
63.4
0.42
1.7
76.27
34

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344
ENSAPLT00000046864
28567823 - 28610166
42344
ENSAPLT00000037502
28567823 - 28610166
42344