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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28591605_28593573_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28591605 - 28593573
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATT
Flanking Amino Acid:
TDPHIITFDGRLYDNFKTGT
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
77.3
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.4
0.73
0.9
73.8
40.5
Minor 5ss
42.1
-0.9
2.9
59.1
45
Minor BPS
69.5
0.7
1.1
83.52
30.9

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344
ENSAPLT00000046864
28567823 - 28610166
42344