Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28593648_28593975_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28593648 - 28593975

Intron Length:

328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGAAAAT

5'SS Class:

major

3'SS Sequence:

CTTTGTTTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAC

U12 Branch Point Sequence:

CATGACTTAACT

Flanking Amino Acid:

WNGYVPESIQITVKDLPTAY

Intron Amino Acid Position:

330

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.2

0.29

1.2

66.1

39.3

Major BPS

77.1

0.67

77.9

32.2

Major PPT

77.4

0.62

78.6

33.6

Minor 5ss

29.5

-2.4

3.2

40.2

45.6

Minor BPS

65.5

0.56

1.7

78.13

43.8

Associated Gene:

Gene:

VWDE

Ensembl Gene ID:

ENSAPLG00000005813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037502

28567823 - 28610166

42344

ENSAPLT00000006014

28568562 - 28610166

41605

ENSAPLT00000006013

28567823 - 28610166

42344

ENSAPLT00000046864

28567823 - 28610166

42344