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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28594191_28594906_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28594191 - 28594906
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAAA
Flanking Amino Acid:
ISLTLSTVDEGKEQLGLNLA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
100
1.24
0.5
100
0
Major PPT
67.3
0.39
1
63.3
40.9
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
74.7
0.77
1.6
86.42
31.4

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046864
28567823 - 28610166
42344
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344