About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28598315_28601371_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28598315 - 28601371
Intron Length:
3057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAACT
Flanking Amino Acid:
TQGCMGYCAEGKLAPSSSPS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
72.2
0.5
1
67.7
42.7
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
78.9
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344
ENSAPLT00000046864
28567823 - 28610166
42344