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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28600757_28601371_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28600757 - 28601371
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTTTTAATT
Flanking Amino Acid:
TQGCMGYCAEGISFLL*
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
1
75.4
38.6
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
74.3
0.84
1.2
86.64
33.8

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045140
28599802 - 28610166
10365