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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28601604_28604666_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28601604 - 28604666
Intron Length:
3063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTTA
5'SS Class:
major
3'SS Sequence:
TCTGGTGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CATTAACCATCT
Flanking Amino Acid:
PAEMPTKCVEMNHCGTQAPV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
70.3
36.1
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
73.4
0.53
1
69.3
41.8
Minor 5ss
46.5
-0.4
3.1
64.4
47
Minor BPS
37.3
-0.8
2.2
56.88
44.6

Associated Gene:

Gene:
VWDE
Ensembl Gene ID:
ENSAPLG00000005813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045140
28599802 - 28610166
10365
ENSAPLT00000037502
28567823 - 28610166
42344
ENSAPLT00000006014
28568562 - 28610166
41605
ENSAPLT00000006013
28567823 - 28610166
42344
ENSAPLT00000046864
28567823 - 28610166
42344