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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2864920_2865029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2864920 - 2865029
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
CCTCCCAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAACC
Flanking Amino Acid:
YFDEHMKTHTGEKPYICEIC
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.1
38.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
64.6
0.33
0.9
58.4
30.3
Minor 5ss
23.9
-3
3
20.9
37.4
Minor BPS
71.3
0.65
1.5
78.1
37.8

Associated Gene:

Gene:
ZBTB47
Ensembl Gene ID:
ENSAPLG00000022037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038699
2863470 - 2870778
7309