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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28652740_28654626_F

Intron Information:

Intron Rank:
138864
Intron Class:
major
Intron Phase:
Intron Coordinates:
28652740 - 28654626
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CTTTCTTTAGGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
79.2
0.72
1
75
40
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
29.4
-2.4
3.2
40.9
45.4
Minor BPS
53.5
-0
2
62.57
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027669
28652368 - 28663046
10679