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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28658918_28659665_F

Intron Information:

Intron Rank:
138871
Intron Class:
major
Intron Phase:
Intron Coordinates:
28658918 - 28659665
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTACTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81
0.7
0.9
78
40
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
76.9
0.84
1.3
83.04
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033556
28652368 - 28662432
10065