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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28658918_28663003_F

Intron Information:

Intron Rank:
138866
Intron Class:
major
Intron Phase:
Intron Coordinates:
28658918 - 28663003
Intron Length:
4086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTTCCTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
85
0.79
0.7
79
26.6
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
51.5
-0
1.7
59.61
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024772
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027669
28652368 - 28663046
10679