Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28659782_28660861_F

Intron Information:

Intron Rank:

138872

Intron Class:

major

Intron Phase:

Intron Coordinates:

28659782 - 28660861

Intron Length:

1080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTAGAGGC

5'SS Class:

major

3'SS Sequence:

TCAATGTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

CCTTCTTCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.2

58.1

39.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

74.7

0.56

65.2

45.2

Minor 5ss

27.3

-2.6

3.1

31.6

36.2

Minor BPS

57.1

0.08

1.6

58.73

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024772

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033556

28652368 - 28662432

10065