Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28661290_28661856_F

Intron Information:

Intron Rank:

138869

Intron Class:

major

Intron Phase:

Intron Coordinates:

28661290 - 28661856

Intron Length:

567

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTCAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TTTTCTTTCAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

74.3

34.2

Major BPS

0.45

0.9

67.6

25.3

Major PPT

80.2

0.68

79.1

33.2

Minor 5ss

39.2

-1.2

3.4

56.9

47.4

Minor BPS

0.2

1.9

72.3

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024772

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030011

28652368 - 28662432

10065