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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28710288_28714311_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28710288 - 28714311
Intron Length:
4024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATCTACATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATCT
Flanking Amino Acid:
DRLLNGQAVQIRVSQGKEPA
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.8
31.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.5
0.53
1
66.7
38.5
Minor 5ss
33.6
-1.9
3.1
44.2
43.6
Minor BPS
73.3
0.81
1.6
87.39
38.7

Associated Gene:

Gene:
SCIN
Ensembl Gene ID:
ENSAPLG00000006129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006411
28672825 - 28719942
47118