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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28715153_28715645_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28715153 - 28715645
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTATATATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATTATATATTT
Flanking Amino Acid:
TTKINEGQEPEEFWKVLGGK
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
81.3
0.7
0.9
78.5
39.2
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
47.7
-0
2
71.03
40

Associated Gene:

Gene:
SCIN
Ensembl Gene ID:
ENSAPLG00000006129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006411
28672825 - 28719942
47118