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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28718837_28719808_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28718837 - 28719808
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATATTTTACAT
Flanking Amino Acid:
ETERQESVKSAKRYIETDPS
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.2
36.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.7
0.71
0.8
80.2
31.9
Minor 5ss
33
-1.9
3
37.5
42.3
Minor BPS
48.5
-0
1.7
65.05
39.3

Associated Gene:

Gene:
SCIN
Ensembl Gene ID:
ENSAPLG00000006129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006411
28672825 - 28719942
47118