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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28795884_28889943_F

Intron Information:

Intron Rank:
136125
Intron Class:
major
Intron Phase:
Intron Coordinates:
28795884 - 28889943
Intron Length:
94060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAATG
5'SS Class:
major
3'SS Sequence:
GTTTTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.7
0.64
1
74.2
39.4
Minor 5ss
30.2
-2.3
3.2
39
46.4
Minor BPS
72.4
0.7
1.5
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046109
28795048 - 28890771
95724