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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_28890246_28894965_F

Intron Information:

Intron Rank:
136122
Intron Class:
major
Intron Phase:
Intron Coordinates:
28890246 - 28894965
Intron Length:
4720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTGCTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.7
0.71
0.9
73.7
40.8
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
58
0.33
2.1
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023354
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032544
28890178 - 28977394
87217