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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2894252_2894822_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2894252 - 2894822
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCCCTTTAAAG
Flanking Amino Acid:
SSSYGHHSRSSRSYTYDSYY
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
77.8
0.63
1
78.5
27.6
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
64
0.3
1.5
65.96
41.8

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000039666
2890241 - 2915792
25552
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000029865
2891469 - 2915792
24324
ENSAPLT00000021598
2892625 - 2918153
25529
ENSAPLT00000040444
2891629 - 2922781
31153