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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2894883_2895204_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2894883 - 2895204
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATTAACTTAACA
Flanking Amino Acid:
SSSYHSYKSRSRTYSRSRSR
Intron Amino Acid Position:
1352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.8
0.76
0.9
84.6
36
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
72.3
0.69
1.5
80.19
34.8

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000029865
2891469 - 2915792
24324
ENSAPLT00000021598
2892625 - 2918153
25529
ENSAPLT00000040444
2891629 - 2922781
31153
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000039666
2890241 - 2915792
25552