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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2895301_2895537_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2895301 - 2895537
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTCTTGATT
Flanking Amino Acid:
SRSRSSTYSYRSRSYTRSRS
Intron Amino Acid Position:
1320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.7
0.65
0.9
74
35.3
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
77.3
0.94
1
87.23
31.9

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000029865
2891469 - 2915792
24324
ENSAPLT00000021598
2892625 - 2918153
25529
ENSAPLT00000040444
2891629 - 2922781
31153
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000039666
2890241 - 2915792
25552