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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2901392_2902591_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2901392 - 2902591
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TTAATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATTTTCTTAATT
Flanking Amino Acid:
DVPVVNAEPEQKLLDAAPVL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.1
38.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.5
0.66
0.8
78.2
36
Minor 5ss
34.8
-1.7
3.2
48.6
41.6
Minor BPS
85.7
1.2
0.9
93.91
26.5

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021598
2892625 - 2918153
25529
ENSAPLT00000040444
2891629 - 2922781
31153
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000039666
2890241 - 2915792
25552
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000029865
2891469 - 2915792
24324