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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2904659_2905489_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2904659 - 2905489
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGCTTTCCAAAT
Flanking Amino Acid:
RTTKPAPHLDGVHVVFGLVI
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
86.3
0.82
0.8
81.2
30.8
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
44.9
-0.3
1.9
62.46
41.5

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021598
2892625 - 2918153
25529
ENSAPLT00000040444
2891629 - 2922781
31153
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000039666
2890241 - 2915792
25552
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000029865
2891469 - 2915792
24324