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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2905520_2908109_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2905520 - 2908109
Intron Length:
2590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
KETVLHRALQRTTKPAPHLD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.1
0.41
1.1
63.1
42.2
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000040444
2891629 - 2922781
31153
ENSAPLT00000039666
2890241 - 2915792
25552
ENSAPLT00000029865
2891469 - 2915792
24324