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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2905520_2917772_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2905520 - 2917772
Intron Length:
12253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
KENVVFCKMKRTTKPAPHLD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.1
0.41
1.1
63.1
42.2
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012886
2892625 - 2922781
30157