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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29079769_29133489_F

Intron Information:

Intron Rank:
148026
Intron Class:
major
Intron Phase:
Intron Coordinates:
29079769 - 29133489
Intron Length:
53721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
CAGCATGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.3
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
81.7
0.71
0.8
73.9
36.8
Minor 5ss
36.1
-1.6
3.1
47.2
42.9
Minor BPS
38.5
-0.7
2.1
50.96
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047357
29076548 - 29186229
109682