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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2908138_2918108_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2908138 - 2918108
Intron Length:
9971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTAAAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTGTGTAAAA
Flanking Amino Acid:
GESIYGGYFKETVLHRALQR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.3
0.39
1.1
58.2
46
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.8
-0.1
2.4
71.99
40.5

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020519
2892625 - 2922781
30157