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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2908138_2919032_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2908138 - 2919032
Intron Length:
10895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
GTAAAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTGTGTAAAA
Flanking Amino Acid:
FMIQGGDFSEETVLHRALQR
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.3
0.39
1.1
58.2
46
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
48.8
-0.1
2.4
71.99
40.5

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040444
2891629 - 2922781
31153