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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29095457_29133489_F

Intron Information:

Intron Rank:
148018
Intron Class:
major
Intron Phase:
Intron Coordinates:
29095457 - 29133489
Intron Length:
38033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
CAGCATGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
81.7
0.71
0.8
73.9
36.8
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
38.5
-0.7
2.1
50.96
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045990
29095147 - 29186172
91026
ENSAPLT00000022169
29095147 - 29186867
91721