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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29147183_29199683_R

Intron Information:

Intron Rank:
146975
Intron Class:
major
Intron Phase:
Intron Coordinates:
29147183 - 29199683
Intron Length:
52501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACTCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
47
-0.1
1.9
66.92
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026373
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045122
29147042 - 29200552
53511