About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29186098_29193270_F

Intron Information:

Intron Rank:
148024
Intron Class:
major
Intron Phase:
Intron Coordinates:
29186098 - 29193270
Intron Length:
7173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTAATTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCTACCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73
0.52
1
66.3
43.7
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
61.5
0.44
1.9
81.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046955
29133159 - 29193491
60333