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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2919141_2922717_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2919141 - 2922717
Intron Length:
3577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AAACTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTGTTTAAACT
Flanking Amino Acid:
TCKNFLCLCSGEKGIGKTTG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
73.5
0.53
0.9
66.4
39.5
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
63
0.49
1.7
82.56
39.6

Associated Gene:

Gene:
NKTR
Ensembl Gene ID:
ENSAPLG00000012358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031279
2834104 - 2922792
88689
ENSAPLT00000020519
2892625 - 2922781
30157
ENSAPLT00000012886
2892625 - 2922781
30157
ENSAPLT00000040444
2891629 - 2922781
31153