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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29259948_29277690_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29259948 - 29277690
Intron Length:
17743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
ACTCTGTTACTC
Flanking Amino Acid:
QEPRDFAYDSGDVKQEPGMY
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
77.7
0.62
0.9
73.2
37
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
43.7
-0.5
2.2
52.93
39.4

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047398
29253234 - 29317053
63820