About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29263033_29277690_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29263033 - 29277690
Intron Length:
14658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTAACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCTCTTTAACT
Flanking Amino Acid:
QEPRDFAYDSGCMYEKGPRQ
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
73.4
35.9
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
77.1
0.93
1.2
81.74
40.3

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007319
29253234 - 29317053
63820