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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29277939_29281611_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29277939 - 29281611
Intron Length:
3673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACCTCTCTAACT
Flanking Amino Acid:
IQDNSFPMDHRFRRQLSEPC
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
66.5
0.37
1
57.9
42.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
61.4
0.44
1.7
74.59
42.5

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047398
29253234 - 29317053
63820
ENSAPLT00000007319
29253234 - 29317053
63820