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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29304294_29314244_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29304294 - 29314244
Intron Length:
9951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTCTT
Flanking Amino Acid:
SQLQETWLAEAQVPDNDEQF
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89.3
0.88
0.6
88.2
21.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007319
29253234 - 29317053
63820
ENSAPLT00000047398
29253234 - 29317053
63820