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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29314293_29316037_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29314293 - 29316037
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCTTTTATCC
Flanking Amino Acid:
INRDLAHDSEELFQDLSQLQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.9
0.7
0.8
76.1
32
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
54.3
0.11
1.5
62.94
36.3

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007319
29253234 - 29317053
63820
ENSAPLT00000047398
29253234 - 29317053
63820