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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29316126_29316919_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29316126 - 29316919
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GATTTCTAAAGT
Flanking Amino Acid:
DQQVPYMVTNNPRGRNCNER
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.5
28.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.7
0.69
0.8
75.7
32.9
Minor 5ss
31.3
-2.1
3.3
44.6
43.6
Minor BPS
54.6
0.22
2
73.26
43.6

Associated Gene:

Gene:
ETV1
Ensembl Gene ID:
ENSAPLG00000007011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047398
29253234 - 29317053
63820
ENSAPLT00000007319
29253234 - 29317053
63820