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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2953141_2955488_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2953141 - 2955488
Intron Length:
2348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACACCC
5'SS Class:
major
3'SS Sequence:
GTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTTATCTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
56.1
41.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
84.7
0.78
0.8
81.5
35.9
Minor 5ss
38.9
-1.2
3.1
49.7
40.6
Minor BPS
64.3
0.53
1.7
81.12
40.4

Associated Gene:

Gene:
SEC22C
Ensembl Gene ID:
ENSAPLG00000012311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018903
2952910 - 2968661
15752