About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2956353_2958562_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2956353 - 2958562
Intron Length:
2210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
ATGTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGT
Flanking Amino Acid:
GTAKGRDLSIHFLSSGDIAC
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.9
0.56
1
70.9
43.7
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
61.2
0.43
1.9
82.72
39.3

Associated Gene:

Gene:
SEC22C
Ensembl Gene ID:
ENSAPLG00000012311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039020
2953527 - 2969357
15831
ENSAPLT00000018903
2952910 - 2968661
15752
ENSAPLT00000012818
2955489 - 2968661
13173