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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29565560_29570661_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29565560 - 29570661
Intron Length:
5102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
CACCTTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CCATTTTCACCT
Flanking Amino Acid:
DLARCLRWGGGYEGENLMKI
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
67.3
0.39
1
64.7
36.1
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
46.5
-0.1
1.8
59.65
44.4

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000043780
29370929 - 29698675
327747
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409
ENSAPLT00000039991
29370929 - 29717062
346134