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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29570752_29573050_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29570752 - 29573050
Intron Length:
2299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATTC
Flanking Amino Acid:
GTVGWILDCIEKANLLKHPP
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
74.2
36.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.9
0.79
0.7
80
30.9
Minor 5ss
39.7
-1.1
2.8
51.7
45.1
Minor BPS
59.9
0.29
1.6
65.17
41.7

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039991
29370929 - 29717062
346134
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000043780
29370929 - 29698675
327747
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409