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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29597934_29611476_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29597934 - 29611476
Intron Length:
13543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
PPTSICPVVLERQATVKKEK
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
75.8
0.58
1
76.8
31.6
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409
ENSAPLT00000039991
29370929 - 29717062
346134
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000043780
29370929 - 29698675
327747