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Intron Name: Anas_platyrhynchos_platyrhynchos_2_2961001_2965893_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2961001 - 2965893

Intron Length:

4893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTATTATTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

GGHAEVHVEVVPTYRMQRVT

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

74.9

36.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.58

1.1

80.3

36.3

Minor 5ss

40.7

-1

2.8

49.7

41.9

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

SEC22C

Ensembl Gene ID:

ENSAPLG00000012311

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039020

2953527 - 2969357

15831

ENSAPLT00000018903

2952910 - 2968661

15752

ENSAPLT00000012818

2955489 - 2968661

13173