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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29611576_29615765_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29611576 - 29615765
Intron Length:
4190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TGTCTTCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
GLHCVWCQITLHNKCASHLK
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
74.4
0.55
0.8
69.4
31.4
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039991
29370929 - 29717062
346134
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409