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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29611576_29615962_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29611576 - 29615962
Intron Length:
4387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
TYVKSKKNTDLHNKCASHLK
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
74.4
0.55
0.8
69.4
31.4
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043780
29370929 - 29698675
327747