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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29615883_29615962_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29615883 - 29615962
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATTAACCC
Flanking Amino Acid:
TYVKSKKNTDVMHHFWVEGN
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.6
0.8
0.7
81.6
29.6
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
48
-0.1
2
65.19
40.7

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409
ENSAPLT00000039991
29370929 - 29717062
346134
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747