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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29618996_29627082_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29618996 - 29627082
Intron Length:
8087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTTATGT
Flanking Amino Acid:
PLLVLLGLENNVKDDGQHVW
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
1
66.1
40.2
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
53.7
0.19
1.9
76.38
40.7

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000043780
29370929 - 29698675
327747
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409
ENSAPLT00000039991
29370929 - 29717062
346134